Preheat the oven to 150 ° C / 300 ° F. In a large mixing bowl, place the wheat flour along with the baking powder, Italian herbs, salt, and pepper. Stir with a spoon.
Stir in the eggs and milk. Stir vigorously, avoiding lumps.
When you are sure you have removed all the lumps, add the cheddar cheese, and the pepperoni. Stir until well blended.
Pour the mixture into a silicone mold for mini cupcakes. Top with chunky melted cheese, and bake the cheesy pepperoni pizza puffs for about 15 minutes until golden brown on top.
Serve with marinara sauce.